Homo sapiens - Downloads


  • Arabidopsis
  • Dictyostelium
  • Fruit fly
  • Human
  • Mouse
  • Rat
  • Roundworm
  • Yeast
  • Zebrafish

The links below provide annotation files for all editions.

Summary statistics of each edition. Single row per edition.

edition: GOA release edition.

date: GOA release date.

go_date: Mapped GO ontology date for this edition.

avg_direct_by_gene: Mean count of terms directly annotation to a gene.

avg_inferred_by_gene: Mean count of terms directly and/or indirectly annotation to a gene.

avg_direct_similarity: Mean jaccard similarity of a gene's directly annotated terms comparing this edition to the most recent (2020-02-24).

avg_inferred_similarity: Mean jaccard similarity of a gene's directly and/or indirectly annotated terms comparing this edition to the most recent (2020-02-24).

avg_inferred_by_term: Mean count of genes directly and/or indirectly annotated with a term.

avg_multifunctionality: Mean multifunctionality over all genes. Multifunctionality is a measure of the number of functions a gene is involved in. For a more precise definition, see Gillis and Pavlidis, 2011..

gene_count: Count of genes in this edition.

Download Summary By Edition
One row per distinct edition and term. Includes counts of genes annotated with a given term both directly and indirectly.

edition: GOA release edition.

date: GOA release date.

go_date: Mapped GO ontology date for this edition.

go_id: Gene Ontology ID.

direct_count: Count of genes that are directly annotated with this term.

inferred_count: Count of genes that are directly and/or indirectly annotated with this term.

Download Annotation Counts By Term
One row per distinct edition and gene. Includes counts of terms annotated to a given gene both directly and indirectly.

edition: GOA release edition.

date: GOA release date.

go_date: Mapped GO ontology date for this edition.

accession: Mapped current Uniprot primary accession.

symbol: Mapped current gene symbol.

direct_count: Count of terms that are directly annotated to this gene.

inferred_count: Count of terms that are directly and/or indirectly annotated to this gene.

multifunctionality: A measure of the number of functions a gene is involved in. For a more precise definition, see Gillis and Pavlidis, 2011.

Download Annotation Counts By Gene

The links below provide historical single edition annotation files.

EditionDate

Summary statistics of each edition. Single row per edition.

edition: GOA release edition.

date: GOA release date.

go_date: Mapped GO ontology date for this edition.

avg_direct_by_gene: Mean count of terms directly annotation to a gene.

avg_inferred_by_gene: Mean count of terms directly and/or indirectly annotation to a gene.

avg_direct_similarity: Mean jaccard similarity of a gene's directly annotated terms comparing this edition to the most recent (2020-02-24).

avg_inferred_similarity: Mean jaccard similarity of a gene's directly and/or indirectly annotated terms comparing this edition to the most recent (2020-02-24).

avg_inferred_by_term: Mean count of genes directly and/or indirectly annotated with a term.

avg_multifunctionality: Mean multifunctionality over all genes. Multifunctionality is a measure of the number of functions a gene is involved in. For a more precise definition, see Gillis and Pavlidis, 2011..

gene_count: Count of genes in this edition.

Summary

One row per distinct edition and term. Includes counts of genes annotated with a given term both directly and indirectly.

edition: GOA release edition.

date: GOA release date.

go_date: Mapped GO ontology date for this edition.

go_id: Gene Ontology ID.

direct_count: Count of genes that are directly annotated with this term.

inferred_count: Count of genes that are directly and/or indirectly annotated with this term.

Counts Per Term

One row per distinct edition and gene. Includes counts of terms annotated to a given gene both directly and indirectly.

edition: GOA release edition.

date: GOA release date.

go_date: Mapped GO ontology date for this edition.

accession: Mapped current Uniprot primary accession.

symbol: Mapped current gene symbol.

direct_count: Count of terms that are directly annotated to this gene.

inferred_count: Count of terms that are directly and/or indirectly annotated to this gene.

multifunctionality: A measure of the number of functions a gene is involved in. For a more precise definition, see Gillis and Pavlidis, 2011.

Counts Per Gene

One row per distinct gene. Includes directly annotated terms.

accession: Mapped current Uniprot primary accession.

symbol: Mapped current gene symbol.

name: Mapped current gene name/description.

go_ids: Pipe delimited list of directly annotation Gene Ontology IDs.

Annotations Per Gene

ErmineJ compatible file; one row per gene symbol. Includes directly annotated terms.

NOTE: There may be separate genes with the same symbol, instead of removing them altogether we instead merge there annotations and list them with a randomly chosen name from among the conflicting genes.

symbol: Mapped current gene symbol.

symbol: Mapped current gene symbol.

name: Mapped current gene name/description (if multiple genes with same symbol, picked at random from them).

go_ids: Pipe delimited list of directly annotation Gene Ontology IDs (if multiple genes with same symbol, annotations are merged).

ErmineJ Annotations
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Gene Ontology Downloads


Click below to visit GO's archive of historical ontology versions.

ftp://ftp.geneontology.org/pub/go/ontology-archive/